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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015872554.1_cds_XP_016434823.1_30844
CDS Infomation

[gene=LOC107761154] [db_xref=GeneID:107761154] [protein=histone deacetylase 15-like] [protein_id=XP_016434823.1] [location=complement(join(97717..97850,98796..98967,101133..101178,101274..101356,101459..101538,104148..104256,104420..104488,104941..104991,105123..105248,105530..105653,105794..105849,106413..106477,106680..106755,106958..107031,108072..108186,108300..108476,108567..108848))] [gbkey=CDS]
Sequence

ATGATCTTGGTGGAGAATTGTGTTATTAATTCCGAAGACAACGAGGTCTCAGAGACACTT
AAAATGGGCAATTTAACTGGTGGAAAGACTGAAACCAATCTTCTAAATCATTCAGAAGTT
GTTATACGTCAAAACTTAAACGGAAGATTGAACGGGGTTGGGTCCACATCTGTTTGTGAT
TATACTTGTCGTAATGATGGACACTCGGGGGAAGTGTCACAACATTGTACGAGAGATTCA
GATGGCATCTCCGATTTGAACCCTGCGCCAGCTGCAATAACTAAAAGTGTGAAGCGTGAA
AATGACATGACCTTGGAGGATATGTACAATGCTCGGTACAATCTTGACGAGGACGACGAT
GACAGTGACTGGGAACCATCAGAAAAGCAAGTAGAAGTTCCGAGGTGGTTCTGTGTCAAT
TGTACAATGGTCAATGTCGAGGATGTTTCCAATTGTGAAATATGCGGAGAACACAGAGAA
TCTGGAATCCTCACGCGTGGATTTTTTGCTTCTCCATATCTGCCTGTAGAGGATGTCAAC
CAAGATGAGTTGCCTGTAACTGAAAAATCTAAAGATCCGTGCAAGCAGAGTTCTTTATCA
TCCTCCACTGCTGTAGGGTTCGATGAAAGGATGTTGCTTCACACAGAAGTTGTAATGAAA
TCTCATCCACATCCTGAAAGACCAGACCGCCTCCAAGCCATTGCAGCTAGCCTCGCTACA
GCAGGTATATTTCCGGGGAAGTGCTATCCCATTGCTGCAAGAGAAATCACAAGGGAAGAA
CTCCAGATGGTCCACTCCACAGAGAATATTGAAGCCGTTGATATTACCAGGCGTATGCTT
GCCAGTTATTTTACACCTGATACATATGCAAATGAACATTCAGCATGTGCTGCCAGGCTT
GCAGCAGGTTTATGTGCTGACCTTGCTTCAGCAATTTACTCTGGGCGTGTCAAAAATGGT
TTTGCTCTGGTTCGTCCTCCCGGCCACCATGCTGGTGTGAAACAGGCCATGGGCTTCTGT
CTCCACAACAATGCAGCAATTGCTGCATCAGCAGCTGAGGCCGCTGGTGCAAAGAAGGTG
TTAATAGTTGATTGGGATGTTCATCATGGGAATGGTACACAAGAAATATTTGAGAGAAGC
AAATCTGTTTTGTATATATCTTTGCACAGACATGAGGGTGGAAGATTCTACCCTGGTACA
GGAGCTGCTGATGAGGTTGGTTCCATGGGTGCAGAAGGATACTGTGTGAATATTCCTTGG
AGCCGTGGGGGAGTGGGTGACAAGGATTACATTTTTGCATTTGAGCAAGTTGTGCTTCCT
ATAGCTTTGGACTTCAATCCAGACTTTACTATCATTTCAGCAGGATTTGATGCTGCTAGG
GGTGATCCCCTTGGTTGCTGTGATGTAACTCCTGCTGGTTATGCATCAATGACTCAAATG
TTGAGTGCATTGTCAGGTGGAAAATTGCTTGTTATTCTTGAGGGCGGCTACAATCTTCGT
TCAATTTCATCATCAGCTACATCGGTGATCAAGGTCTTGCTTGGTGAAGGTCCTGTGATT
GACCTAGACAATGCTGTACCTTCCAAATCTGGATTGCGAAGTGTTATGGATGTTTTAAAG
ATTCAGATGCACTATTGGCCTACATTGGAGACAAACTTCACCAAATTGCAGTCAAAATGG
GGACACTACGTTTTTCAGGACACAAGAAAACAGGGTAAGCGGAGACGCAGGACTGGTGTA
CCAGTATGGTGGCGATGGGGACGAAAGAGGTGGTTGTATCAGATACTATCCAAGCAGCTG
CGTGCAAAATCCTGTTGCAACTATTCTTGTGGATGTTGA

Peptide Sequence

PEP ID

XP_016434823.1
PEP Infomation

PREDICTED: histone deacetylase 15-like [Nicotiana tabacum]
Sequence

MILVENCVINSEDNEVSETLKMGNLTGGKTETNLLNHSEVVIRQNLNGRLNGVGSTSVCD
YTCRNDGHSGEVSQHCTRDSDGISDLNPAPAAITKSVKRENDMTLEDMYNARYNLDEDDD
DSDWEPSEKQVEVPRWFCVNCTMVNVEDVSNCEICGEHRESGILTRGFFASPYLPVEDVN
QDELPVTEKSKDPCKQSSLSSSTAVGFDERMLLHTEVVMKSHPHPERPDRLQAIAASLAT
AGIFPGKCYPIAAREITREELQMVHSTENIEAVDITRRMLASYFTPDTYANEHSACAARL
AAGLCADLASAIYSGRVKNGFALVRPPGHHAGVKQAMGFCLHNNAAIAASAAEAAGAKKV
LIVDWDVHHGNGTQEIFERSKSVLYISLHRHEGGRFYPGTGAADEVGSMGAEGYCVNIPW
SRGGVGDKDYIFAFEQVVLPIALDFNPDFTIISAGFDAARGDPLGCCDVTPAGYASMTQM
LSALSGGKLLVILEGGYNLRSISSSATSVIKVLLGEGPVIDLDNAVPSKSGLRSVMDVLK
IQMHYWPTLETNFTKLQSKWGHYVFQDTRKQGKRRRRTGVPVWWRWGRKRWLYQILSKQL
RAKSCCNYSCGC

Transcript Sequence

Gene sequence data has not been registered.